Microscopy Image Browser (MIB)

Version 1.302.0.0 (41.1 MB) by Ilya Belevich
MIB is a package for segmentation of multi-dimensional (2D-4D) microscopy datasets
5.0
(3)
1.2K Downloads
Updated 9 Feb 2019
View License on GitHub

PLEASE NOTE!
This is an older version tree of MIB, the newer version for Matlab R2014b and newer available from here
http://se.mathworks.com/matlabcentral/fileexchange/63402-microscopy-image-browser-2--mib2-
With MIB you can analyse, segment and visualize various multidimensional datasets from both light and electron microscopy.
See more further details and tutorials on MIB website: http://mib.helsinki.fi/index.html
I would like to acknowledge Matlab File Exchange user community and especially the authors whose functions were utilized during development of the program:
http://mib.helsinki.fi/acknowledgements.html

Cite As

Ilya Belevich (2024). Microscopy Image Browser (MIB) (https://github.com/Ajaxels/MIB), GitHub. Retrieved .

MATLAB Release Compatibility
Created with R2011a
Compatible with any release
Platform Compatibility
Windows macOS Linux

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Classes/@Labels

Classes/@Measure

Classes/@imageData

Classes/@imageUndo

Classes/@roiRegion

GuiTools

GuiTools/volren

ImageFilters

ImageFilters/Coherence_filter

ImageFilters/Coherence_filter/functions

ImageFilters/Coherence_filter/functions2D

ImageFilters/Coherence_filter/functions3D

ImageFilters/Coherence_filter/optimization

ImageFilters/FastMarching

ImageFilters/FastMarching/functions

ImageFilters/FastMarching/shortestpath

ImageFilters/Frangi

ImageFilters/RandomForest

ImageFilters/RandomForest/MembraneDetection

ImageFilters/RandomForest/RF_Class_C

ImageFilters/RandomForest/RF_Reg_C

ImageFilters/Supervoxels

ImportExportTools

ImportExportTools/BioFormats

ImportExportTools/BioFormats/private

ImportExportTools/Fiji

ImportExportTools/HDF5

ImportExportTools/Imaris

ImportExportTools/Imaris/@IceImarisConnector

ImportExportTools/MatTomo/@ImodChunk

ImportExportTools/MatTomo/@ImodChunk/private

ImportExportTools/MatTomo/@ImodContour

ImportExportTools/MatTomo/@ImodContour/private

ImportExportTools/MatTomo/@ImodMesh

ImportExportTools/MatTomo/@ImodMesh/private

ImportExportTools/MatTomo/@ImodModel

ImportExportTools/MatTomo/@ImodModel/private

ImportExportTools/MatTomo/@ImodObject

ImportExportTools/MatTomo/@ImodObject/private

ImportExportTools/MatTomo/@MRCImage

ImportExportTools/MatTomo/@MRCImage/private

ImportExportTools/MatTomo/Utils

ImportExportTools/MatTomo/Visualization

ImportExportTools/Omero

ImportExportTools/export_fig

ImportExportTools/nrrd

Misc_func

Misc_func/imclipboard

Plugins/Demos/generateStereologyGrid

Plugins/Demos/ib_tubesVsSheets

Plugins/IntensityAnalysis/NucleusVsCytoplasm

Plugins/IntensityAnalysis/TripleAreaIntensity

Plugins/Tutorials/guiTutorial

Plugins/Tutorials/otsuThresholding

Tools

Tools/Align

Tools/AreaAnalysis

Tools/RegionGrowing

techdoc

Plugins/Demos/ib_tubesVsSheets

Plugins/IntensityAnalysis/NucleusVsCytoplasm

Plugins/IntensityAnalysis/TripleAreaIntensity

techdoc

Versions that use the GitHub default branch cannot be downloaded

Version Published Release Notes
1.302.0.0

1.302 Improved and simplified the segmentation panel
Added reference to MIB2, which is recommended to use instead of MIB for Matlab R2014b and later
1.23.0.0

new image alignment; IMOD enhanced compatibility, improvements and bug fixes
new image alignment; IMOD enhanced compatibility, improvements and bug fixes
1.2.0.0

Version 1.20 20.06.2016 (volume rendering/new installer)
1.1.0.0

updated description
To view or report issues in this GitHub add-on, visit the GitHub Repository.
To view or report issues in this GitHub add-on, visit the GitHub Repository.