What is difference if I calculate THD for singlle no of cycle or large no of cycle using fft analysis in powergui block.

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I calculated THD for the voltage signal using both THD block and also using fft analysis from powergui. When I mentioned the no of cycle=1, the value of THD was acceptable and also equal to the value given by THD block. But if I increase the no of cycles i.e around 20-50, then the value of THD is way high i.e. around 300%. BUt from the harmonics spectrum, I can see that there is not much presence of higher order harmonics and my waveform isn't distorted at all. What may have gone wrong?
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