how to eliminate unwanted spikes with peaks
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When I plot my signal I notice that some peaks aren't well shaped, as shown in this figure.

This causes problems in my results later.
Is there any function to eliminate these unwanted spikes within the peaks?
7 Comments
Adam
on 31 Jul 2017
What do you mean by 'eliminate' them? Remove the peak entirely or remove the value just less than the peak that causes it to be wider than expected?
asma khedri
on 31 Jul 2017
Adam
on 31 Jul 2017
It shouldn't be if you are using a proper peak detector and there is no trough between the two values.
asma khedri
on 31 Jul 2017
Image Analyst
on 31 Jul 2017
Would you want all peaks that cover more than one index to be replaced by a single index (single x value) with the highest (or average) value? Like if x(30) = 30 and y is 4.5 there, and x(31) = 31 and y is 4.4 there, to have x(30) = (30+31)/2 and y=4.5, and remove x(31) from the array?
asma khedri
on 1 Aug 2017
Image Analyst
on 1 Aug 2017
Edited: Image Analyst
on 1 Aug 2017
It would be easier to show you if you attached the data array. And it would be easier if you had the Image Processing Toolbox so that we can find the weighted centroid of each spike. Do you have that toolbox?
Answers (1)
Jacob Ward
on 5 Sep 2017
You could try interpolating the data to get a clearer peak. Here's an example:
This code generates a peak similar to the one you posted:
x = 10:40;
y = [zeros(1,14) 4.6 4.5 zeros(1,15)];
plot(x,y,'b-')
ylim([0 6])

By interpolating onto a finer x-grid, we get a rounded peak at approximately the right point. You can also try using the 'spline' or 'pchip' methods instead of 'v5cubic' to see if they give you more desirable results
xfine = 10:.2:40;
yfine = interp1(x,y,xfine,'v5cubic');
plot(xfine,yfine,'b-')
ylim([0 6])

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