MRI Brain Segmentation

Neuroimaging Case Study for seminars and webinars.

Description

This case study shows how MATLAB can be used for a medical imaging problem. Given an MRI scan, first segment the brain mass from the rest of the head, then determine the brain volume. Also compare portions of gray and white matter present. This example was developed for seminars. It was also used for webinars for medical applications broadcast live on May 6, 2004.

This package includes some MATLAB code and an MRI scan series consisting of 60 DICOM images. Note that this code relies on MATLAB Central submissions from others. Detailed references to those sources are included.

Acknowledgements

Sliceomatic, Hline And Vline, and Data Marker inspired this file.

• Required Products: Image Processing Toolbox
• MATLAB release: MATLAB 7 (R14)
• Other requirements: * Requires 2 other MATLAB Central submissions. * At least 512MB physical RAM is strongly recommended to run this example.

[naila]

I couldn't able to download the code. please can any one help me?

[elise lau]

I'm new to matlab, doing segmentation of brain tumor from 2D MRI images for my project. anyone have the coding? can help me?thx very much..

[yuvaranjini]

Really good work sir. It would be nice if you add some description to the code.
It helps me a lot

[mariam]

dear All, would you please guide me how I can 1/8 of volume image I mean I can reconstruct the volume image but I do not know how to extract for example 90 degree volume slice of it. I appreciate your help

[priya dharsini]

good work sir. iam a PG student doing project on the same. I dont know how to split white matter from a brain MRI image using matlab.Will you please help me. My mail id is [e-mail]

[manoj]

high to all........actually i am beginner in image segmentation could anybody help me

my email id is [e-mail]

thanks

[porngamol sitlaothaworn]

it helps me in senior project :)

[Nurhasanah Ivansyah]

it's very good tutorial. Very good coding for matlap brain image processing.
but can you help how to segmenting brain white matter, gray matter and cerebrospinal fluid. if you have algoritm or code in matlab, help give me.
i really need....

[Deepak Kumar Rout]

 

[Robert Bemis]

Note for users who get stuck by the IMVIEW error. That function was replaced by IMTOOL (years ago). In analyze_series8.m just replace all occurrences of "imview" with "imtool" (and save).

See also
>> doc imview

[Preeti]

i am getting the error in imtool and not able to remove even downloading the patch as advised. please help.

[sheldon]

your work is good. it is helping me a lot. but i am facing a small problem if i give input(dcm files) of larger size like 138 kb other than that you used is 129 kb. please help me out with this. i am using matlab r2008a. i get the error;

voxel_size =

0.9375 0.9375 6.0000

Name Size Bytes Class Attributes

D 256x256x12 1572864 uint16

??? Index exceeds matrix dimensions.

Error in ==> analyze_series8 at 43
im = squeeze(D(:,:,i));

after the dicom files stored are read.

[Nandan S]

 

[shokrollah derafsh]

 

[Fazl-e- wahab]

 

[mahima bansal]

Make it more explanatory. so that it could be efficient for a beginner.

[sajal chirvi]

 

[rohit garg]

i wanted a code for segmentation of brain tumor from 2D MRI images.

[nandy kidd]

getting the following error in R2007

??? Output argument "hout" (and maybe others) not assigned during call to "C:\Program Files\MATLAB\R2007a\toolbox\images\imuitools\imtool.m (imtool)".

Error in ==> imtool at 155
close_all = nargin == 2 && ischar(varargin{1}) && ischar(varargin{2}) && ...

Error in ==> imview at 18
hh = imtool(varargin{:});

Error in ==> analyze_series8 at 53
imview close all

[FABIAN FORERO]

me sirve para el trabajo de grado

[mitali lembhe]

 

[Dheeraj Chahal]

Excellent code

[basil abu-hijleh]

Very good coding for matlap brain image processing

[Jau-Jie You]

Good tutorial.

[chethana s s]

matlab codeing on brain image segmentation

[Joseph Paul]

 

[l smith]

very good!

[Roman Rodionov]

Excellent presentation as an introductory talk for those who start MRI analysis with MATLAB.
Thank you very much!

[aftab muhammad]

no

[Muhammad altaf]

help ful for the study of MRI
I am in search for xray enhancement

[Mohammad Ahmad]

 

[Jiang Yun]

It's helpful for my study in medical imaging. I've not been kowning that MATLAB could also deal with the DICOM files.

[Sanaz negahbani]

program with Matlab software for leaf classification & image segmentation
thanks alot

[PAN QF]

 

[hamid reza imani]

 

[bahare vafadar]

 

[George Theofilogiannakos]

 

[ee fzaf]

 

[S.Ravikumar sampathkumar]

 

[zj zhao]

ww

[yd ccec]

good ,i like it

[roopa m]

 

[wenshu lee]

it can help the students interested in the image processing.