MSKCC CGDS Cancer Genomics Toolbox

Functions for retrieving data from the Cancer Genomics Data Server (CGDS) at MSKCC cBio.

Version 1.5.0.0 (23.9 KB)
1.9K Downloads
(2)
19 Sep 2013

You are now following this Submission

This toolbox provides direct access to cancer genomics data from within the MATLAB environment. The toolbox will query the Cancer Genomics Data Server Web API, provided by the Computational Biology Center at Memorial Sloan-Kettering Cancer Center, and return data in a structured format.

A tutorial ('showdemo cgdstutorial') makes it easy to get started.

Cite As

Erik Larsson (2026). MSKCC CGDS Cancer Genomics Toolbox (https://www.mathworks.com/matlabcentral/fileexchange/31297-mskcc-cgds-cancer-genomics-toolbox), MATLAB Central File Exchange. Retrieved .

Acknowledgements

Inspired: MSKCC CGDS Cancer Genomics Toolbox v1.07

Categories

Find more on Genomics and Next Generation Sequencing in Help Center and MATLAB Answers

General Information

MATLAB Release Compatibility

  • Compatible with any release

Platform Compatibility

  • Windows
  • macOS
  • Linux
Open in new tab
Version Published Release Notes
1.5.0.0

Version 1.06: Adapted to changes in web API (clinical data). Previous version no longer works correctly. Trailing '/' no longer required in URL. Updated URL in help pages. Updated tutorial for new clinical data format.

1.4.0.0

Bug fixes to cgdstutorial.m
1.3.0.0

Updates to comply with changed naming conventions for case set IDs and genetic profile IDs.

1.2.0.0

Minor update to cgdstutorial.m
1.1.0.0

v1.02 9/5/2011: Adapted to changes in web API.
1.0.0.0