Running a model within the boundaries of a figure.

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Hi everyone,
I've tried googling this, but I guess I'm not using the right search terms. Could anyone tell me what toolbox I need to use in order to run a model within the boundaries of a figure that I draw? The model in question is a simple drift diffusion model, but I'd like to see how the model runs when I run it in non-square environments.
Thanks for the help

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