Intermittent Windows error - GetCommMOdemStatus

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Hi everyone,
I created a GUI program (Compiled Console Executable) that controls a Temperature Chamber and two Agilent power supplies. The purpose of this program is to change the voltage/temperature every few hours. From a functionality perspective, the code works great for a few weeks to a month. The MCR console returns the error GetCommMOdemStatus Failed! Windows also pops up a Runtime Error box.
I'm currently trying to debug/catch the error, but the error message doesn't tell me much. Does anyone have experience/advise on how to troubleshoot this?
Version: Matlab R2013a

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