GO = geneont('live', 'false'); stopped working
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Hi I was using genont for a while and everything worked fine, but suddenly it stopped working
the line of code I am using is :
GO = geneont('live', 'false');
and it should return a geneont object.
This is the error I get
Error using == Matrix dimensions must agree.
Error in geneont (line 160) fromID2 = sscanf(char(regexp(obo(relaTypes==pof),'GO:\d+','match','once'))','GO:%d')+1;
3 Comments
Thomas De Luca
on 13 Oct 2014
Edited: Thomas De Luca
on 13 Oct 2014
As of right now, I am receiving the same error when using
geneont('LIVE',true)
The error also occurs if I download gene_ontology.obo and use
geneont('file','gene_ontology.obo')
UPDATE:
I was able to resolve the problem by downloading a previous revision (4.1809) of gene_ontology.obo. This will be a suitable workaround for me until the problem is resolved.
Accepted Answer
Arthur Goldsipe
on 14 Oct 2014
It looks like this problem was also fixed in the latest update to the Gene Ontology database. It sounds like maybe there was a problem in a particular version of the database.
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