Creating vertical temperature profile over complex terrain with animation

Is it possible to plot temperature between two points separated by (e.g., 5000 feet) over complex terrain (mountains) in order to create an animation of temperature change over elevation and time? In other words, my goal is an animation (3D contour plot) e.g., [x=time, y=temperature, z=elevation] that combines vertical distribution of temperature over mountains (elevation) with data-sets I have from two (or more) weather stations to animate a thermal regime over a period of time, i.e., winter.